Probing Allosteric Mechanism with Long-Range Rigidity Transmission Across Protein Networks

Allosteric transmission refers to regulation of protein function at a distance. “Allostery” involves regulation and/or signal transduction induced by a perturbation event. Allostery, which has been coined the “second secret of life,” is a fundamental prop

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Luisa Di Paola Alessandro Giuliani Editors

Allostery Methods and Protocols

METHODS

IN

MOLECULAR BIOLOGY

Series Editor John M. Walker School of Life and Medical Sciences University of Hertfordshire Hatfield, Hertfordshire, UK

For further volumes: http://www.springer.com/series/7651

For over 35 years, biological scientists have come to rely on the research protocols and methodologies in the critically acclaimed Methods in Molecular Biology series. The series was the first to introduce the step-by-step protocols approach that has become the standard in all biomedical protocol publishing. Each protocol is provided in readily-reproducible step-bystep fashion, opening with an introductory overview, a list of the materials and reagents needed to complete the experiment, and followed by a detailed procedure that is supported with a helpful notes section offering tips and tricks of the trade as well as troubleshooting advice. These hallmark features were introduced by series editor Dr. John Walker and constitute the key ingredient in each and every volume of the Methods in Molecular Biology series. Tested and trusted, comprehensive and reliable, all protocols from the series are indexed in PubMed.

Allostery Methods and Protocols

Edited by

Luisa Di Paola Unit of Chemical-Physics Fundamentals in Chemical Engineering, Department of Engineering, Universitá Campus Bio-Medico di Rome, Rome, Italy

Alessandro Giuliani Environment and Health Department, Instituto Superiore di Sanità, Rome, Italy

Editors Luisa Di Paola Unit of Chemical-Physics Fundamentals in Chemical Engineering Department of Engineering Universita´ Campus Bio-Medico di Rome Rome, Italy

Alessandro Giuliani Environment and Health Department Instituto Superiore di Sanita` Rome, Italy

ISSN 1064-3745 ISSN 1940-6029 (electronic) Methods in Molecular Biology ISBN 978-1-0716-1153-1 ISBN 978-1-0716-1154-8 (eBook) https://doi.org/10.1007/978-1-0716-1154-8 © Springer Science+Business Media, LLC, part of Springer Nature 2021 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herei