Transcription Factor Regulatory Networks Methods and Protocols

Transcription Factor Regulatory Methods details various techniques ranging from cutting-edge to general techniques use to study transcription factor regulatory networks. Written in the highly successful Methods in Molecular Biology series format, chapters

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Etsuko Miyamoto-Sato Hiroyuki Ohashi Hirotaka Sasaki Jun-ichi Nishikawa Hiroshi Yanagawa Editors

Transcription Factor Regulatory Networks Methods and Protocols

METHODS

IN

M O L E C U L A R B I O LO G Y

Series Editor John M. Walker School of Life Sciences University of Hertfordshire Hatfield, Hertfordshire, AL10 9AB, UK

For further volumes: http://www.springer.com/series/7651

Transcription Factor Regulatory Networks Methods and Protocols

Edited by

Etsuko Miyamoto-Sato, Hiroyuki Ohashi, Hirotaka Sasaki, and Jun-ichi Nishikawa Division of Interactome Medical Science, The Institute of Medical Science, The University of Tokyo, Minato-ku Tokyo, Japan

Hiroshi Yanagawa Department of Biosciences and Informatics, Faculty of Science and Technology, Keio University, Kohoku-ku, Yokohama, Japan

Editors Etsuko Miyamoto-Sato Division of Interactome Medical Science The Institute of Medical Science The University of Tokyo Minato-ku, Tokyo, Japan Hirotaka Sasaki Division of Interactome Medical Science The Institute of Medical Science The University of Tokyo Minato-ku, Tokyo, Japan

Hiroyuki Ohashi Division of Interactome Medical Science The Institute of Medical Science The University of Tokyo Minato-ku, Tokyo, Japan Jun-ichi Nishikawa Division of Interactome Medical Science The Institute of Medical Science The University of Tokyo Minato-ku, Tokyo, Japan

Hiroshi Yanagawa Department of Biosciences and Informatics Faculty of Science and Technology Keio University, Kohoku-ku Yokohama, Japan

ISSN 1064-3745 ISSN 1940-6029 (electronic) ISBN 978-1-4939-0804-2 ISBN 978-1-4939-0805-9 (eBook) DOI 10.1007/978-1-4939-0805-9 Springer New York Heidelberg Dordrecht London Library of Congress Control Number: 2014939325 © Springer Science+Business Media New York 2014 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. Permissions for use may be obtained through RightsLink at the Copyright Clearance Center. Violations are liable to prosecution under the respective Copyright Law. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are