Linking Literature, Information, and Knowledge for Biology Workshop
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Edited by S. Istrail, P. Pevzner, and M. Waterman Editorial Board: A. Apostolico S. Brunak M. Gelfand T. Lengauer S. Miyano G. Myers M.-F. Sagot D. Sankoff R. Shamir T. Speed M. Vingron W. Wong
Subseries of Lecture Notes in Computer Science
Christian Blaschke Hagit Shatkay (Eds.)
Linking Literature, Information, and Knowledge for Biology Workshop of the BioLink Special Interest Group, ISMB/ECCB 2009 Stockholm, June 28-29, 2009 Revised Selected Papers
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Series Editors Sorin Istrail, Brown University, Providence, RI, USA Pavel Pevzner, University of California, San Diego, CA, USA Michael Waterman, University of Southern California, Los Angeles, CA, USA Volume Editors Christian Blaschke Bioalma C/Ronda de Poniente, 4, 2-C 28760 Tres Cantos, Madrid, Spain E-mail: [email protected] Hagit Shatkay Computational Biology and Machine Learning Lab School of Computing, Queen’s University Kingston, ON, K7L 3N6 Canada E-mail: [email protected]
Library of Congress Control Number: 2010927026 CR Subject Classification (1998): J.3, I.2, F.1, I.4, I.5, I.2.7 LNCS Sublibrary: SL 8 – Bioinformatics ISSN ISBN-10 ISBN-13
0302-9743 3-642-13130-1 Springer Berlin Heidelberg New York 978-3-642-13130-1 Springer Berlin Heidelberg New York
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Preface
This volume of Lecture Notes in Bioinformatics (LNBI) contains selected papers from the workshop of the BioLINK Special Interest Group (SIG) on Linking Literature, Information and Knowledge for Biology. The workshop was held June 28–29, 2009 at the ISMB/ECCB 2009 conference in Stockholm (http://www.iscb.org/ismbeccb2009). The BioLINK SIG meeting has been regularly held in association with the ISMB conferences since 2001, focusing on the development and application of resources and tools for biomedical text mining. The SIG is interdisciplinary in nature, and brings together researchers applying natural language processing, text mining, information extraction and retrieval in the biomedical domain, with scientists from bioinformatics and biology. This year the SIG included two special sessions, one on the analysis of images and figures, which play a critial role in scientific papers, and the other on the future of scientific publication. Overview papers concerned with both these topics are include
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