Algorithms in Bioinformatics 11th International Workshop, WABI 2
This book constitutes the refereed proceedings of the 11th International Workshop on Algorithms in Bioinformatics, WABI 2011, held in Saarbrücken, Germany, in September 2011. The 30 papers presented were carefully reviewed and selected from 77 submissions
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Edited by S. Istrail, P. Pevzner, and M. Waterman Editorial Board: A. Apostolico S. Brunak M. Gelfand T. Lengauer S. Miyano G. Myers M.-F. Sagot D. Sankoff R. Shamir T. Speed M. Vingron W. Wong
Subseries of Lecture Notes in Computer Science
Teresa M. Przytycka Marie-France Sagot (Eds.)
Algorithms in Bioinformatics 11th International Workshop, WABI 2011 Saarbrücken, Germany, September 5-7, 2011 Proceedings
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Series Editors Sorin Istrail, Brown University, Providence, RI, USA Pavel Pevzner, University of California, San Diego, CA, USA Michael Waterman, University of Southern California, Los Angeles, CA, USA Volume Editors Teresa M. Przytycka National Center for Biotechnology Information U.S. National Library of Medicine 8600 Rockville Pike, Bethesda, MD 20894, USA E-mail: [email protected] Marie-France Sagot Institut National de Recherche en Informatique et en Automatique (INRIA) and Université Lyon 1 (UCBL) 43 bd du 11 Novembre 1918, 69622 Villeurbanne cedex, France E-mail: [email protected]
ISSN 0302-9743 e-ISSN 1611-3349 ISBN 978-3-642-23037-0 e-ISBN 978-3-642-23038-7 DOI 10.1007/978-3-642-23038-7 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2011934142 CR Subject Classification (1998): F.2, F.1, H.2.8, G.2, E.1, J.3 LNCS Sublibrary: SL 8 – Bioinformatics
© Springer-Verlag Berlin Heidelberg 2011 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Typesetting: Camera-ready by author, data conversion by Scientific Publishing Services, Chennai, India Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com)
Preface
We are pleased to present the proceedings of the 11th Workshop on Algorithms in Bioinformatics (WABI 2011) which took place in Saarbr¨ ucken, Germany, September 5–7, 2011. The WABI 2011 workshop was part of the six ALGO 2011 conference meetings, which, in addition to WABI, included ESA, IPEC, WAOA, ALGOSENSORS, and ATMOS. WABI 2011 was hosted by the Max Planck Institute for Informatics, and sponsored by the European Association for Theoretical Computer Science (EATCS) and the International Society for Computational Biology (ISCB). See https://algo2011.mpi-inf.mpg.de/ for more details. The Workshop in Algorith
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