Algorithms in Bioinformatics 7th International Workshop, WABI 2007,
This book constitutes the refereed proceedings of the 7th International Workshop on Algorithms in Bioinformatics, WABI 2007, held in Philadelphia, PA, USA in September 2007. The 38 revised full papers presented together with the abstract of a keynote talk
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Edited by S. Istrail, P. Pevzner, and M. Waterman Editorial Board: A. Apostolico S. Brunak M. Gelfand T. Lengauer S. Miyano G. Myers M.-F. Sagot D. Sankoff R. Shamir T. Speed M. Vingron W. Wong
Subseries of Lecture Notes in Computer Science
Raffaele Giancarlo Sridhar Hannenhalli (Eds.)
Algorithms in Bioinformatics 7th International Workshop, WABI 2007 Philadelphia, PA, USA, September 8-9, 2007 Proceedings
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Series Editors Sorin Istrail, Brown University, Providence, RI, USA Pavel Pevzner, University of California, San Diego, CA, USA Michael Waterman, University of Southern California, Los Angeles, CA, USA Volume Editors Raffaele Giancarlo Università degli Studi di Palermo Department of Mathematics via Archirafi 34, 90123 Palermo, Italy E-mail: [email protected] Sridhar Hannenhalli University of Pennsylvania Penn Center for Bioinformatics and Department of Genetics 1409 Blockley Hall, 423 Guardian Drive, Philadelphia, PA 19104-6021, USA E-mail: [email protected]
Library of Congress Control Number: 2007932232
CR Subject Classification (1998): F.1, F.2.2, E.1, G.1-3, J.3 LNCS Sublibrary: SL 8 – Bioinformatics ISSN ISBN-10 ISBN-13
0302-9743 3-540-74125-9 Springer Berlin Heidelberg New York 978-3-540-74125-1 Springer Berlin Heidelberg New York
This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. Springer is a part of Springer Science+Business Media springer.com © Springer-Verlag Berlin Heidelberg 2007 Printed in Germany Typesetting: Camera-ready by author, data conversion by Scientific Publishing Services, Chennai, India Printed on acid-free paper SPIN: 12103256 06/3180 543210
Preface
We are very pleased to present the proceedings of the Seventh Workshop on Algorithms in Bioinformatics (WABI 2007), which took place in Philadelphia, September 8–9, 2007, under the auspices of the International Society for Computational Biology (ISCB), the European Association for Theoretical Computer Science (EATCS), the Penn Genomics Institute and the Penn Center for Bioinformatics. The Workshop on Algorithms in Bioinformatics covers research in all aspects of algorithmic work in bioinformatics. The emphasis is on discrete algorithms that address important problems in molecular biology, that are founded on sound models, that are computationally efficient, and that have been implemented and tested in simulations and on real datasets. The goal is to present recent research results, including significant work-in-progress, and to identify and explore directions of future research. Specific topic
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