Algorithms in Bioinformatics 12th International Workshop, WABI 2
This book constitutes the refereed proceedings of the 12th International Workshop on Algorithms in Bioinformatics, WABI 2012, held in Ljubljana, Slovenia, in September 2012. WABI 2012 is one of six workshops which, along with the European Symposium on Alg
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Edited by S. Istrail, P. Pevzner, and M. Waterman Editorial Board: A. Apostolico S. Brunak M. Gelfand T. Lengauer S. Miyano G. Myers M.-F. Sagot D. Sankoff R. Shamir T. Speed M. Vingron W. Wong
Subseries of Lecture Notes in Computer Science
Ben Raphael Jijun Tang (Eds.)
Algorithms in Bioinformatics 12th International Workshop, WABI 2012 Ljubljana, Slovenia, September 10-12, 2012 Proceedings
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Series Editors Sorin Istrail, Brown University, Providence, RI, USA Pavel Pevzner, University of California, San Diego, CA, USA Michael Waterman, University of Southern California, Los Angeles, CA, USA Volume Editors Ben Raphael Brown University Department of Computer Science P.O. Box 1910 Providence, RI 02912, USA E-mail: [email protected] Jijun Tang University of South Carolina Department of Computer Science and Engineering 301 Main Street Columbia, SC 29208, USA E-mail: [email protected]
ISSN 0302-9743 e-ISSN 1611-3349 ISBN 978-3-642-33121-3 e-ISBN 978-3-642-33122-0 DOI 10.1007/978-3-642-33122-0 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2012945432 CR Subject Classification (1998): F.2, J.3, G.2.2, F.1, I.2.6, H.2.8, G.1.2 LNCS Sublibrary: SL 8 – Bioinformatics
© Springer-Verlag Berlin Heidelberg 2012 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Typesetting: Camera-ready by author, data conversion by Scientific Publishing Services, Chennai, India Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com)
Preface
This volume contains papers presented at the 12th Workshop on Algorithms in Bioinformatics (WABI), held September 10–12th, 2012, at University of Ljubljana, Slovenia. WABI 2012 was one of six workshops which, along with the European Symposium on Algorithms (ESA), constituted the ALGO annual meeting. WABI focuses on algorithmic advances in bioinformatics, computational biology, and systems biology with a particular emphasis on discrete algorithms and machine-learning methods that address important problems in molecular biology. The 35 papers this volume include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others. In addition to presentations o
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