Grid Computing in Life Science First International Workshop on Life
Researchers in the ?eld of life sciences rely increasingly on information te- nology to extract and manage relevant knowledge. The complex computational and data management needs of life science research make Grid technologies an attractive support soluti
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Edited by S. Istrail, P. Pevzner, and M. Waterman Editorial Board: A. Apostolico S. Brunak M. Gelfand T. Lengauer S. Miyano G. Myers M.-F. Sagot D. Sankoff R. Shamir T. Speed M. Vingron W. Wong
Subseries of Lecture Notes in Computer Science
Akihiko Konagaya Kenji Satou (Eds.)
Grid Computing in Life Science First International Workshop on Life Science Grid, LSGRID 2004 Kanazawa, Japan, May 31 – June 1, 2004 Revised Selected and Invited Papers
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Series Editors Sorin Istrail, Celera Genomics, Applied Biosystems, Rockville, MD, USA Pavel Pevzner, University of California, San Diego, CA, USA Michael Waterman, University of Southern California, Los Angeles, CA, USA Volume Editors Akihiko Konagaya RIKEN Genomic Sciences Center Bioinformatics Group E216 1-7-22 Suehiro-cho, Tsurumi, Yokohama, 230-0045, Japan E-mail: [email protected] Kenji Satou School of Knowledge Science Japan Advanced Institute of Science and Technology 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan E-mail: [email protected]
Library of Congress Control Number: 2005921642
CR Subject Classification (1998): H.4, D.4, D.2, F.2, J.3 ISSN 0302-9743 ISBN 3-540-25208-8 Springer Berlin Heidelberg New York This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. Springer is a part of Springer Science+Business Media springeronline.com © Springer-Verlag Berlin Heidelberg 2005 Printed in Germany Typesetting: Camera-ready by author, data conversion by Scientific Publishing Services, Chennai, India Printed on acid-free paper SPIN: 11403326 06/3142 543210
Preface
Researchers in the field of life sciences rely increasingly on information technology to extract and manage relevant knowledge. The complex computational and data management needs of life science research make Grid technologies an attractive support solution. However, many important issues must be addressed before the Life Science Grid becomes commonplace. The 1st International Life Science Grid Workshop (LSGRID 2004) was held in Kanazawa Japan, May 31–June 1, 2004. This workshop focused on life science applications of grid systems especially for bionetwork research and systems biology which require heterogeneous data integration from genome to phenome, mathematical modeling and simulation from molecular to population levels, and high-performance computing including parallel processing, special hardware and grid computing. Fruitful discussions took place through 18 oral presentations, including a keynote address and five invited talks, and 16 poster and demonstration pre
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