Performance Analysis and Grid Computing Selected Articles from the W

Past and current research in computer performance analysis has focused primarily on dedicated parallel machines. However, future applications in the area of high-performance computing will not only use individual parallel systems but a large set of networ

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PERFORMANCE ANALYSIS AND GRID COMPUTING Selected Articles from the Workshop on Performance Analysis and Distributed Computing August 19-23, 2002, Dagstuhl, Germany

Edited by

Vladimir Getov

University of Westminster, UK

Michael Gerndt

Technical University Munich, Germany

Adolfy Hoisie Los Alamos National Laboratory, USA

Allen Malony University of Oregon-Eugene, USA

Barton Miller University of Wisconsin-Madison, USA

SPRINGER SCIENCE+BUSINESS MEDIA, LLC

Library of Congress Cataloging-in-Publication Data A C L P . Catalogue record for this book is available from the Library of Congress. Performance Analysis and Grid Computing Edited by Vladimir Getov, Michael Gerndt, Adolfy Hoisie, Allen Malony and Barton Miller ISBN 978-1-4613-5038-5 ISBN 978-1-4615-0361-3 (eBook) DOI 10.1007/978-1-4615-0361-3 Copyright © 2004 by Springer Science+Business Media New York Originally published by Kluwer Academic Publishers in 2004 Softcover reprint of the hardcover 1st edition 2004 A l l rights reserved. No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording, or otherwise, without written permission from the Publisher Springer Science+Business Media, L L C , with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper.

Contents

Preface

vii

Contributing Authors

xi

Part I

Performance Modeling and Analysis

Different Approaches to Automatic Performance Analysis of Distributed ~~~

3

Tomas Margalef, Josep Jorba. Oleg Morajko. Anna Morajko. Emilio Luque Performance Modeling of Deterministic Transport Computations Darren J. Kerbyson. Adolfy Hoisie, Shawn D. Pautz

21

Performance Optimization ofRK Methods Using Block-based Pipelining Matthias Korch, Thomas Rauber, Gudula Runger

41

Performance Evaluation of Hybrid Parallel Programming Paradigms Achal Prabhakar, Vladimir Getov

57

Performance Modelling for Task-Parallel Programs Matthias Kuhnemann, Thomas Rauber, Gudula Runger

77

Collective Communication Patterns on the Quadrics Network Salvador Coil. Jose Duato. Francisco J. Mora, Fabrizio Petrini. Adolfy Hoisie

93

Part II

Performance Tools and Systems

The Design of a Performance Steering System for Component-based Grid Applications Ken Mayes, Graham D. Riley, Rupert W. Ford, Mikel Lujan. Len Freeman, Cliff Addison

111

Advances in the TAU Performance System Allen D. Malony. Sameer Shende, Robert Bell. Kai Li, Li Li. Nick Trebon

129

Uniform Resource Visualization: Software and Services Kukjin Lee. Diane T. Rover

145

vi

PERFORMANCE ANALYSIS AND GRID COMPUTING

A Performance Analysis Tool for Interactive Grid Applications Marian Bubak. Wlodzimierz Funika. Roland Wismiiller

161

Dynamic Instrumentation for Java Using a Virtual JVM Kwok Yeung. Paul H.J. Kelly. Sarah Bennett

175

Aksum: A Performance Analysis Tool for Parallel and Distributed Applications