Genome-wide analysis of evolution and expression profiles of NAC transcription factor gene family in Juglans regia L.
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RESEARCH PAPER
Genome-wide analysis of evolution and expression profiles of NAC transcription factor gene family in Juglans regia L. Hanif Khan 1 & Feng Yan 1 & Yujie Yan 1 & Pengpeng Chen 1 & Ruimin Xi 1 & Irfan Ullah 1 & Xiaobang Peng 2 & Xiang Luo 3 & Ming Yue 4 & Peng Zhao 1 Received: 28 December 2019 / Accepted: 14 July 2020 # INRAE and Springer-Verlag France SAS, part of Springer Nature 2020
Abstract & Key message NAC transcription factors may play important roles in the biological processes in Persian walnut. A total of 102 JrNACs were identified in Persian walnut. The conserved domains, transcriptome profile, expression analysis, and interaction network suggest that JrNAC1-4 plays potential roles in Persian walnut flowering development. & Context NACs are plant-specific transcription factors that participate in various plant developmental processes such as flowering, plant growth regulation, and development. We identified and analyzed the evolution and expression profiles of NAC genes in Juglans regia. & Aims The main objectives were to identify the NAC transcription factors and verify the expression levels in different tissues and female flowers in developmental stages in Persian walnut. & Methods We identified NAC transcription factors in J. regia based on the genome-wide analysis. We analyzed the phylogenetic relationships, conserved domain, chromosome location, gene structure, and gene collinearity of JrNACs. We also verified the JrNAC expression levels based on transcriptome analysis and qRT-PCR. & Results We identified 102 NAC genes in J. regia and divided them into ten subfamilies. A total of 30 pairs of JrNAC genes were expanded by whole-genome duplications (WGDs) and one pair of genes (JrNAC2-10 and JrNAC9-8) as a tandem duplication in Persian walnut. Collinearity analysis results indicate that a large number of syntenic relationship events existed between J. regia and Populus trichocarpa. We found that JrNAC1-4 and JrNAC2-6 were expressed significantly higher in female flowers based on both transcriptome and qPCR analysis. We further identified that JrNAC2-9 and JrNAC9-6 were highly expressed at the end period of flowering stages. Hanif Khan and Feng Yan contributed equally to this work. Handling Editor: Ricardo Alia Contribution of the co-authors Conceptualization: Peng Zhao and Ming Yue Methodology: Hanif Khan and Feng Yan Software: Hanif Khan and Feng Yan Validation: Yujie Yan, Pengpeng Chen, and Ruimin Xi Formal Analysis: Hanif Khan and Feng Yan Investigation: Hanif Khan, Feng Yan, and Xiaobang Peng Resources: Hanif Khan, Feng Yan, and Ming Yue Data curation: Peng Zhao, Feng Yan, and Hanif Khan Writing (original draft): Hanif Khan, Feng Yan, and Peng Zhao Writing (review and editing): Hanif Khan, Feng Yan, Irfan Ullah, Xiaobang Peng, Xiang Luo, Ming Yue, and Peng Zhao Visualization: Ming Yue and Peng Zhao Supervision: Peng Zhao Project administration: Peng Zhao and Ming Yue Funding acquisition: Ming Yue and Peng Zhao * Ming Yue [email protected] * Peng Zhao [email protected]
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