Fungal Genomics Methods and Protocols
This volume details protocols covering nearly all aspects of fungal genomics. New and updated chapters guide the reader through experimental genomics, biotechnologies, and the analysis and processing of data. Written in the highly successful&nb
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Ronald P. de Vries Adrian Tsang Igor V. Grigoriev Editors
Fungal Genomics Methods and Protocols Second Edition
Methods
in
M o l e c u l a r B i o lo g y
Series Editor: John M. Walker School of Life and Medical Sciences University of Hertfordshire Hatfield, Hertfordshire, AL10 9AB, UK
For further volumes: http://www.springer.com/series/7651
Fungal Genomics Methods and Protocols Second Edition Edited by
Ronald P. de Vries Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
Adrian Tsang Centre for Structural and Functional Genomics, Concordia University, Montreal, QC, Canada
Igor V. Grigoriev US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA
Editors Ronald P. de Vries Fungal Physiology, Westerdijk Fungal Biodiversity Institute Utrecht, The Netherlands
Adrian Tsang Centre for Structural and Functional Genomics Concordia University Montreal, QC, Canada
Igor V. Grigoriev US Department of Energy Joint Genome Institute Walnut Creek, CA, USA
ISSN 1064-3745 ISSN 1940-6029 (electronic) Methods in Molecular Biology ISBN 978-1-4939-7803-8 ISBN 978-1-4939-7804-5 (eBook) https://doi.org/10.1007/978-1-4939-7804-5 Library of Congress Control Number: 2018941834 © Springer Science+Business Media, LLC, part of Springer Nature 2018 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Printed on acid-free paper This Humana Press imprint is published by the registered company Springer Science+Business Media, LLC part of Springer Nature. The registered company address is: 233 Spring Street, New York, NY 10013, U.S.A.
Preface The development of genomics has had a major impact on many fields of research and the fungal field is no exception. The ability to compare species at the genomic level has significantly enhanced our understanding of fungal taxonomy, evolution, physiology, and cell biology and allowed us to
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