Isolation, characterisation and genome analysis of a novel ginsenosides hydrolysing bacterium Ginsengibacter hankyongi g
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ORIGINAL PAPER
Isolation, characterisation and genome analysis of a novel ginsenosides hydrolysing bacterium Ginsengibacter hankyongi gen. nov., sp. nov. isolated from soil Muhammad Zubair Siddiqi . Md. Amdadul Huq . Wan-Taek Im
Received: 8 July 2020 / Accepted: 16 October 2020 Ó Springer Nature Switzerland AG 2020
Abstract A novel yellow-pigmented bacterial strain (designated BR5-29T), was isolated and its taxonomy was studied. Phylogenetic study based on the 16S rRNA and draft genome sequence placed the strain BR5-29T in a distinct lineage within the family Chitinophagaceae, sharing B 93.4% sequence similarity with members of the closely related genera Ferruginibacter, Flavisolibacter, Flavitalea and Niastella. The novel isolate showed the highest sequence similarity to the genus Ferruginibacter. The draft genome of strain BR5-29T had a total length of 5,505,520 base pairs. A total of 4585 genes were
Electronic supplementary material The online version of this article (https://doi.org/10.1007/s10482-020-01485-4) contains supplementary material, which is available to authorized users. M. Z. Siddiqi W.-T. Im (&) Department of Biotechnology, Hankyong National University, 327 Chungang-no, Anseong-si, Kyonggi-do 17579, Republic of Korea e-mail: [email protected] M. Z. Siddiqi W.-T. Im AceEMzyme Co., Ltd, Academic Industry Cooperation, 327 Chungang-no, Anseong-si, Kyonggi-do 17579, Republic of Korea Md. A. Huq Department of Food and Nutrition, College of Biotechnology and Natural Resource, Chung-Ang University, Gyeonggi-do, Anseong-si 17546, Republic of Korea
identified, in which 4537 were CDS and 48 RNA genes were assigned a putative function. The genome annotation of BR5-29T showed 225 carbohydrate genes which may be responsible for the conversion of major ginsenosides to minor ginsenosides. Strain BR5-29T contained MK-7 as a predominant quinone, and iso-C15:0, iso-C15:0 G, iso-C17:0 3-OH, and C16:1 x7c and/or C16:1 x6c (summed feature 3) as major fatty acids. The polar lipids found in the strain BR529T were phosphatidylglycerol (PG), diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), five unidentified polar lipids (L1–L5), two unidentified aminolipid and one unidentified aminophospholipid. Our pilot data demonstrate that the novel isolate shares the similar major polar lipid PE, major quinone MK-7 and major fatty acids with the described members of the family Chitinophagaceae. However, the low 16S rRNA gene sequence (\ 93.4%), the little high amount of C12:0, iso-C17:0 2-OH and iso-C15:1 2-OH fatty acids, low DNA G ? C content, and the presence of DPG, PG and two unidentified polar lipids (L1 and L3 differentiate the BR5-29T from its closest phylogenetic neighbors. Thus, the isolate represents a novel genus and species in the family Chitinophagaceae for which the name Ginsengibacter hankyongi gen. nov., sp. nov. is proposed. The type strain is BR5-29T (= KACC 19446T = LMG 30462T). Thus, we predict that this novel strain may prove useful for the future
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