Lymphoma Methods and Protocols
This second edition volume expands on the previous edition with descriptions of recent developments in the field. The new and updated chapters discuss the latest approaches for studying single cell RNA sequencing, whole genome sequencing data, CRISPR/Cas9
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Ralf Küppers Editor
Lymphoma Methods and Protocols Second Edition
METHODS
IN
MOLECULAR BIOLOGY
Series Editor John M. Walker School of Life and Medical Sciences University of Hertfordshire Hatfield, Hertfordshire, AL10 9AB, UK
For further volumes: http://www.springer.com/series/7651
Lymphoma Methods and Protocols Second Edition
Edited by
Ralf Küppers Institute of Cell Biology (Cancer Research), Medical School, University of Duisburg-Essen, Nordrhein-Westfalen, Essen, Germany
Editor Ralf Ku¨ppers Institute of Cell Biology (Cancer Research) Medical School, University of Duisburg-Essen Nordrhein-Westfalen, Essen, Germany
ISSN 1064-3745 ISSN 1940-6029 (electronic) Methods in Molecular Biology ISBN 978-1-4939-9150-1 ISBN 978-1-4939-9151-8 (eBook) https://doi.org/10.1007/978-1-4939-9151-8 Library of Congress Control Number: 2019934201 © Springer Science+Business Media, LLC, part of Springer Nature 2019 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. This Humana Press imprint is published by the registered company Springer Science+Business Media, LLC, part of Springer Nature. The registered company address is: 233 Spring Street, New York, NY 10013, U.S.A.
Preface Since publication of the first edition of this book on methods in lymphoma research in 2013, a variety of further methods have been developed or further refined that can now be used to study the molecular biology of lymphomas. Therefore, this new edition includes several new chapters that describe approaches for single cell RNA sequencing, for the evaluation of whole genome sequencing data, for compound library screens to determine lymphoma cell vulnerabilities and resistance, for CRISPR/Cas9-mediated gene knockout, for analysis of protein interactions by a proximity ligation assay, and for phosphoproteomic analysis of signaling pathways and, finally, an ultrasensitive approach for the detect
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